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For example, Liebeschuetz et al. [21] evaluated the pose prediction and the performance of Gold scoring functions using the Directory of Useful Decoys (DUD) dataset [22], which consists of 40 varied protein targets.
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It optimally aligns hydrogens, identifies favorable tautomeric and protonation states, and evaluates the predicted pose [3].
For docking analysis, we based on -PLP1, -PLP2, and -PMF to evaluate the docking pose of traditional Chinese medicine (TCM) compounds.
Docking analysis was based on -PMF, -PMF04, and Dock Score to evaluate the docking pose of traditional Chinese medicine (TCM) compounds.
The same protocol was used to dock the same 30 conformations of OxA into OX2 (see panels B and D of Figure 6) and the same procedure used to evaluate the best pose.
We evaluated the docked poses of known β2AR agonists by two criteria: (1) the aminergic group should salt-bridge with the key residue Asp1133.32, and (2) the polar head groups should hydrogen bond with at least one of the three TM5 serine residues.
This study determined the percentage of industrial liquid waste and sludge of the total waste dumped at the landfill sites, analyzed the chemical characteristics of liquid waste stream and contaminated water at disposal sites, and finally evaluated the possible risk posed by the continuous dumping of such wastes at the unlined landfills.
The internal Andersen documents paint a complicated picture of a firm where accountants were struggling to evaluate the risks posed by Enron's aggressive approach to accounting.
To evaluate the danger posed by an object on the road, Google's software takes into account the behaviour of other vehicles.
Lindzen has made a career of being wrong about climate science, and he's who The Weekly Standard is relying on to evaluate the risks posed by climate change.
The Food and Drug Administration recently set a limit of 10 p.p.b. for arsenic in apple juice, and the agency is now evaluating the risks posed by foods like rice, which tend to pick up arsenic from the soil.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com