Sentence examples for evaluated read from inspiring English sources

Allowing for the possibility of low quality reads at the ends of sequences, we evaluated read quality using Galaxy.

Replicates were evaluated, read counts per transcript were normalised, and analysis of differential expression was performed by using the R Bioconductor DESeq package (Anders and Huber, 2010).

Since the published genetic map contains large gaps on chromosome 7, chromosome 2 and elsewhere, we also collated available cytogenetic map data from Fluorescence In Situ Hybridization with Tyramide Signal Amplification (FISH-TSA) analysis using cDNA probes [ 8, 10, 20], and evaluated read density on scaffolds anchored by known physical location of probes.

Approximately 319 million quality evaluated reads aligned to the rice genome and were used for further analysis (Table  1).

To evaluate read quality, the read length with phred quality ≥ 20 was estimated by measuring the read length after trimming by the qualityTrimmer module of the Euler-SR package [ 33].

Then we used a commercial software, CLC genomics workbench (CLC bio) to evaluate read mapping efficacy with a different algorism, which is based on Smith and Waterman [ 46], from Bowtie2.

After evaluating read quality with FastQC (http://www.bioinformatics.babraham.ac.uk/projects/fastqc/), FASTQ/A Trimmer from the FASTX-Toolkit (http://hannonlab.cshl.edu/fastx_toolkit/index.html) was used to remove the last 10 bases of each read leaving 90 bp pair-end reads for the nine genotypes.

To evaluate reading ability in patients who had cataract surgery with binocular implantation of a dual-optic accommodating intraocular lens (IOL) over a 2-year period.

This procedure also allowed evaluating reads that were already filtered by quality scores.

HLAminer can evaluate reads by direct alignment.

For each text size read, we evaluate reading accuracy by determining the percentage of words read correctly at first attempt for each character size.