Sentence examples for evaluate reads from inspiring English sources

HLAminer can evaluate reads by direct alignment.

A general framework to simulate sequencing reads and evaluate read mappers.

To evaluate read mappings, BWA aln (BWA version 0.7.10-r789, http://bio-bwa.sourceforge.net/ 54 was used to align reads, and the "XA tag" was used for read enumeration and separation of host and pathogen sequenced reads.

To evaluate reading ability in patients who had cataract surgery with binocular implantation of a dual-optic accommodating intraocular lens (IOL) over a 2-year period.

For each text size read, we evaluate reading accuracy by determining the percentage of words read correctly at first attempt for each character size.

To evaluate read quality, the read length with phred quality ≥ 20 was estimated by measuring the read length after trimming by the qualityTrimmer module of the Euler-SR package [ 33].

Then we used a commercial software, CLC genomics workbench (CLC bio) to evaluate read mapping efficacy with a different algorism, which is based on Smith and Waterman [ 46], from Bowtie2.

This procedure also allowed evaluating reads that were already filtered by quality scores.

Approximately 319 million quality evaluated reads aligned to the rice genome and were used for further analysis (Table  1).

In general, the coverage can safely be set to 100-fold coverage when evaluating reads > 100 bp, because every position will still be sampled 100 different times.

Allowing for the possibility of low quality reads at the ends of sequences, we evaluated read quality using Galaxy.