Sentence examples for evaluate linkage from inspiring English sources

The multilocus 1.2 software [61] was used to calculate the standardized index of association (IA) and evaluate linkage disequilibrium among the loci.

TASSEL 1.9.6 was used to evaluate linkage disequilibrium (LD), extract polymorphic sites, calculate narrow sense heritability, and perform General and Mixed Linear Models (GLM, MLM) with incorporation of trait data, population structure (Q) and kinship matrix (K) [59].

For the microsatellite data, GENEPOP v4.0 [22] was used to evaluate linkage disequilibrium (LD) between all pairs of loci for each population (1000 dememorization iterations, 1000 batches, 10000 iterations per batch) and Hardy-Weinberg equilibrium (HWE).

To evaluate linkage quality, three standard metrics were used: precision, recall and F-measure [ 21].

We used χ to evaluate Hardy-Weinberg equilibrium and Haploview to evaluate linkage disequilibrium.

D′ was calculated to evaluate linkage disequilibrium for all pairwise SNP combinations.

After introducing our conceptual framework, we will use field data to systematically evaluate linkages and feedbacks between ecology (rainfall and vegetation), resource generation (pastoral productivity), and household wealth among Mukugodo pastoralists.

Euclidean distance is commonly used to evaluate linkages in the expression of different genes.

Two regions were defined by evaluating linkage disequilibrium across the identified area.

In light of the data we present here, suggesting that Vmn1r67 has alleles fixed in M. m. domesticus and M. m. musculus, and the previously reported fixed alleles for Abpa27 in the three subspecies of the house mouse [59], [60], we evaluated linkage disequilibrium (LD) between these two genes.

We previously evaluated linkage and linkage disequilibrium in the NIMH National Institute of Mental Healthh) bipolar pedigrees [ 5].