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Furthermore, numerical characterisation techniques based on graphical representations have enabled quantitative estimations of sequence similarities and dissimilarities [see review 14].
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Loci in both wild emmer and T. aestivum for which empirical estimates of θ π exceeded the upper bound were excluded from estimation of sequence diversity.
Model-based estimation of sequence divergence and diversity from sequence samples is a ubiquitous technique in HIV literature [36].
Read length, sequencing error, and the amount of sequence obtained all play a role in the estimation of sequence diversity and error, and methods to account for all of these are constantly evolving.
b) Inaccurate estimation of sequence specificity of RNase digestion.
For estimation of sequence divergence from element consensus sequences, sequences were aligned using POA (Lee et al. 2002).
Fasta formatted data used for estimation of sequence divergence between genomic housekeeping genes and Hel-2 elements among Lepidoptera.
The overall procedure includes three key steps: (1) pre-processing of CLIP amplicons, (2) estimation of sequence specificity of RNase digestion, and (3) prediction of RNA binding regions.
The estimation of sequence and structure conservation of selected protein regions is performed using constructed structural models and identified protein sequence and structure homologs.
Our method generalizes this approach, attempting to overcome this problem by using an estimation of sequence probability that requires fewer parameters and can account for bias outside of the initial heptamer.
Estimation of sequence similarity between Hel-2 Helitrons from Ostrinia nubilalis (previously named OnMITE01; Coates et al. [ 31 ]) and Bombyx mori (Han et al. [ 5 ]) identified from GenBank accessions.
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