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We recently developed a new tool for estimating line origin probabilities.
To our knowledge, no algorithms for estimating line origin of alleles in crossbred individuals have been described.
triM is therefore recommended as the method of choice for estimating line origin probabilities in outbred line crosses.
In this paper, we introduced and validated a method for estimating line origin of alleles in crossbred individuals when pedigree information is unknown.
To date, this algorithm, or variants of it, has been the most commonly used method for estimating line origin probabilities in outbred line crosses.
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We estimated Line Pop, the most popular of the five, to have generated 1.75M downloads within 72 hours.
The aim of the method is to estimate line origin of alleles.
We estimated line mean-basis heritabilities for each environment individually, across the North Carolina environments, across the Galicia environments, and we also estimated line mean-basis heritability for the combined data set across all environments.
The main objective of our method, however, was to estimate line origin of marker alleles in the crossbred population.
Best linear unbiased estimated line values for each NIL were then calculated from the multienvironment model (Table S3).
We estimated line dosages at each putative QTL using probabilities estimated by the haplotype reconstruction program HAPPY (M ott et al. 2000).
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