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Based on the visual observations of key biological descriptors such as the density and shape of microvillis, we pursued the quantitative SEM image analyses by estimating cell surface roughness as an approximation to microvilli density/coverage, shape/geometry and length.
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To estimate cell surface fluctuations, the measurement time of the I D curve was checked against a known standard [16, 18, 19]. Figure 2b shows the representative I D curves for L929 cells with different CPFA's.
To estimate cell surface expression of receptors carrying an N-terminal HA-tag, we used an indirect cellular ELISA [57].
Orai1-BBS-YFP and Orai1-YFP was stably transfected into U2OS cells to estimate cell surface Orai1.
Using an in vitro model of primary hepatocyte culture that stabilizes PHH function, is oxygen-responsive, and infectible with liver-stage malaria, we applied a mathematical framework to estimate cell surface oxygen tensions under a variety of experimental manipulations.
Subsequently, cells were stimulated with TG (solid lines) or left unstimulated (hashed lines) and incubated with BTX to estimate cell surface Orai1 as described in Figure 3 figure supplement 2. BTX binding to Orai1-YFP expressing cells was used as a control (gray line).
We chose a biomass estimate – cell surface area – to determine exposure to cyanobacteria, rather than the traditional reporting method of cell counts per unit volume of water [[ 9] (Chapter 3)].
To estimate the cell surface oxygen tensions in MPCCs, the transport and consumption of oxygen was modeled as a one-dimensional reaction-diffusion system, as described previously (Yarmush et al., 1992).
Using this model system and a mathematical framework to estimate the cell surface oxygen partial pressures (pO2) under a variety of experimental manipulations, we show that oxygen has a profound impact on the Plasmodium liver stage.
Absorption properties of extracellular matrix (ECM) were investigated for carbon negative-ion-implanted polymers of polystyrene (PS), polydimethylsiloxane (PDMS) and poly-lactic acid (PLA) to estimate cell attachment properties of the modified surface without cell culture.
Stable expression of Orai1-BBS-YFP followed by exogenous application of labeled BTX provided an estimate of cell surface Orai1 levels.
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