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To estimate sequence diversity derived from anther culturing, we performed whole-genome resequencing of five Korean rice accessions, including three anther culture lines (BLB, HY-04 and HY-08), their progenitor cultivar (Hwayeong), and an additional japonica cultivar (Dongjin).
In the next lemma, we prove that the state estimate sequence { X ̄ ( j ) } j ≥ 0 given in (6) converges a.s. to the consensus subspace C by showing that the consensus algorithm over an undirected effective network graph satisfies the Lyapunov function assumptions of Lemma 2. Lemma 3 (a.s.s
Therefore it is difficult to estimate sequence conservation by multiple sequence alignment.
To estimate sequence polymorphism within Anopheles we conducted a large-scale survey of dbSNP [ 17].
As an alternative, comparative genomic hybridization (CGH) offers a means to estimate sequence divergence.
Kimura distance for protein alignments as implemented in the EMBOSS package was used to estimate sequence divergence.
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He said the $1m sequencers (sold in a minimum of 10 units) would be able to deliver a genome for just under $1,000 £6100; 735 euros), consistent with calculations the National Human Genome Research Institute uses to estimate sequencing costs.
Lack of a similar database for camel unfortunately prevents these results to be processed to better estimate sequences representing full length cDNAs and total number of genes in camel.
The sequence reads from all 14 libraries were analysed according to Fasteris quality control, using an indexed PhiX reference sequence on each call lane to estimate sequencing error.
An additional 43 kbp of Sanger sequence was used to validate variable sites in the multiple sperm whale alignment and to estimate sequencing error of the NGS platforms.
To estimate sequencing depth, we calculated the average depth in a sliding window of 20 bp across the atpI – rpoC2 region.
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