Sentence examples for estimate reads from inspiring English sources
"We are writing to seek clarification and an explanation of the rationale for the Department's August 2, 2011 estimate," reads a Thursday letter from the Republican Study Committee, a House group, to Geithner (hat tip to Politico).
Some provide word counts while others estimate reading time.
Mapping was conducted using gsmapper software (Roche) and used to estimate read coverage across the length of elements.
To investigate how these three counting strategies differed in their ability to estimate read abundance, we used in silico generated ChIP-seq data.
Therefore, we performed a Poisson regression to estimate read coverage for the B73 and Mo17 alleles based on generalized Poisson distribution by considering the amount of B73- and Mo17-unique reads as well as common reads within an allele.
Mapping results generated by TopHat were filtered to retain only unique mapped reads before being piped into Cuffdiff (http://cole-trapnell-lab.github.io/cufflinks/) to estimate read counts for each gene.
K-mer-based approaches are used to assemble reads, detect repeats, estimate read depth, identify protein binding sites (Newburger and Bulyk, 2009), find mutations in sequencing data (Nordström et al., 2013) and perform a variety of other tasks.
We adopted Bedtools [ 49] to estimate read count of each gene, and then measured the differential expression using the Bioconductor package (version 2.14) in R, including DESeq2 (version 1.4.5), edgeR (version 3.0.8) and voom-limma (version 3.20.8).
In preparing this database the unigene to contig mapping described above was provided to permit RSEM to estimate read counts at both the individual contig (putative isoforms) and unigene level.
These programs perform non-FPKM normalization of read counts (for example, using LOWESS regression, or quantile normalization), estimate read count fold changes between conditions at the gene or the transcript level, and assess the statistical significance of observed read count differences.
The estimated reads per library were 25 million.
