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From Table 1 and Table 2 it is evident that if there are no errors in the datasets, the accuracy found by applying the different methods is in the range: [97%, 100%].
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Some values were excluded from the analysis following Richardson et al. (2011) to account for possible errors in the dataset (during measurements, recording or data entry).
First, provided that the sequencing errors in the dataset are random in respect to mutation class, one can presume that the number of errors in each mutation class is proportional to the number of nucleotide positions that allow such mutations.
This overall variability of error distribution makes it difficult to draw any clear conclusions ruling out particular parameters that might potentially influence error rates or to identify a single mechanism accounting for the observed errors in the dataset.
We noted that, the value of C NC was set to a small value instead of zero in real applications to tolerate possible genotyping and sampling errors in the dataset.
The key file allows the government agency to re-match if the researchers detect errors in the dataset, but the key file also allows the researchers to request additional matching of data to their original dataset (after approval by the EC).
As far as we know, none of the previously published human coexpression networks [2], [5], [6] has a comprehensive calculation of the estimated statistical error in the datasets at different levels of coverage.
> -wrap-foot> There appears to be a significant amount of Type II error in the datasets (Table 3).
It is also the case that GPA3 is more robust against the errors introduced in the datasets.
8 Methods to first identify and then correct errors in these datasets would be immensely valuable in the setting of the large-scale genomics projects being performed.
The presence of error in the dataset, however, does not preclude an analysis using this dataset.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com