Sequences with unusual insertions and/or deletions, stemming most likely from gene prediction errors, were removed, as were sequences that aligned very poorly (e.g. some protozoan parasite sequences).
In the ROIs appearing from this linkage analysis, possible Mendelian consistent errors were removed as well as the possible presence of linkage disequilibrium.
The flagged values were then manually evaluated and data entry errors were removed as indicated.
If these errors were removed (as this specific feature was not part of the PharmaNet specification), the overall rate of discrepant profiles would fall from 84.3% to 77.4% (940/1215).
A handful of structures were corrected for structural errors and redundant entries were removed, as were salts of metals other than sodium or potassium.
The Rugby union keyword placed on this report in error was removed on Saturday 27 June 2015.
Of 67 islands, 7 were less than 400-kb long and were removed as errors.
Singleton SNPs (those seen only once across the dataset) were removed as potential errors, and the number of unique haplotypes for each individual in the cluster were evaluated for evidence of paralogous clustering.
Four individuals with > 200 genotypes defined as Mendelian errors were removed from the analysis.
If the three strongly smear positive first readings were removed as potential mislabelling errors the specificity of the magnetic bead FM would increase to 90.1% (155/172).
