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Our results underscore the importance of population-specific, non-equilibrium demographic processes in patterning diversity within A. lyrata.
Non-equilibrium demographic processes can further increase this variance and mimic expected patterns of genetic diversity following selective events (reviewed by [1]).
As mentioned above, the statistical model 1 was proposed to deal with this latter kind of non-equilibrium demographic scenarios [17], [18].
Our results underscore the importance of population-specific, non-equilibrium demographic processes in patterning diversity within A. lyrata and lay the groundwork for future studies of demographic history and local adaptation.
All A. lyrata populations also yielded positive values of Tajima's D. We estimated a demographic model for these populations, finding evidence of population divergence over the past 19,000 to 47,000 years involving non-equilibrium demographic events that reduced the effective size of most populations.
To determine if the observed ω value could be expected under a neutral non-equilibrium demographic model, we conducted a parametric bootstrap analysis [ 76].
Sequence data were analysed with statistical tests of standard neutral equilibrium and demographic scenarios simulated to compare with the observed results.
Indeed, current forest tree populations can rarely be considered to be at equilibrium, and demographic processes play a major role in the dynamics of adaption over a few generations (Savolainen et al. 2007).
We also assumed that each mosquito population persists indefinitely at demographic equilibrium.
Here I explain this paradox in terms of the ecological equivalence realised by coexisting species at demographic equilibrium.
As the population grows, increasing amounts of energy are needed to bring more and more people to demographic equilibrium.
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