Sentence examples for equilibration in which from inspiring English sources
The fourth and last step was the equilibration in which the initial conditions were set for the next run.
This was followed by energy minimization to remove clashes, assignment of initial velocities from a Maxwell distribution, and 1 ns of solvent equilibration in which the positions of heavy protein and DNA atoms were restrained.
After energy minimization (600 steps), the system was subjected to a three-phase equilibration, in which protein atoms were initially subjected to positional restraints that were then progressively released.
This was followed by an equilibration phase in which the velocities were allowed to rescale over the next 18.5 psec in steps of 0.25 psec to stabilize the system within a 300±5 K window.
The equilibration phases, in which the temperature was kept at 300 K, lasted 500,000 steps.
The second step was performed in an equilibration solution in which the DTT was substituted by 2.5% w/v iodoacetamide.
The strips were then given a further 15 min incubation in a modified equilibration buffer in which the DTT was replaced by 135 mM iodacetamide.
After isoelectrofocusing, the strips were equilibrated in a buffer containing 30% glycerol, 6 M urea, 2% SDS, 10 mg/mL dithiothreitol (DTT) and 0.05 M Tris-HCl (pH 6.8) for 15 min and then for an additional 15 min in equilibration buffer in which 42.5 mg/mL iodoacetamide replaced the DTT.
The ring junction in 9 was assigned as cis because a trans junction between two five membered rings is highly strained38, and therefore strongly disfavored in a molecule in which equilibration between cis- and trans-junction is possible via the open keto form (see also Fig. 4).
This is followed by the equilibration period (500-1000 ps) in which the velocity-scaling is removed and the argon atoms are allowed to move freely and equilibrate.
This difference may help determine which scenarios are most realistic for the Earth by combining N-body simulations with core formation models in which equilibration pressures are calculated as in this study.
