Sentence examples for equal alignment from inspiring English sources

One can identify and set aside reads that map to multiple locations in the genome with nearly equal alignment quality, denoting such cases as potential sources of variant-calling errors.

In particular, results demonstrate strains N40, ZS7, and B31 as equal top alignments with the best match.

The distributional proximity of alignments was tested against random expectations by simulating random positions for a1 and a2 sites involved in alignments for an equal number of alignments as in the observed data, with 1000 replicated randomizations for comparison to the observed mean distances to the pseudoautosomal regions.

When two genomic nucleotide/protein sequences are aligned, BLAST produces HSPs (high scoring pairs) that consist of two sequence fragments of arbitrary but equal length, which alignment is locally maximal and for which the alignment score meets or exceeds a threshold or cut-off score.

Protein alignments are split into two equal sized sub-alignments and processed identically in order to assess the accuracy and reproducibility of specific algorithms as well as other inherent parameters.

As the catalytic domain of the different PPIases families have been found to exhibit good conservation between related organisms [ 4, 5, 147], a conservative expected (E) value cut-off of 1 × 10-10 and/or greater or equal to 30% alignment sequence identity [ 148] was used to identify homologues of the three PPIase families.

The edit distance of the alignment equals the total number of differences in A. A score can be calculated for an alignment given a scoring system.

During ESTs retrieval from the TIGR and Gene Index Project databases, the BLASTN algorithm was applied with the matrix – blosum62, Expect value – 10 and alignments equal to 20.

Most importantly, the resulting alignments were of a quality equal to SILVA-generated alignments.

Finally we accepted the alignments if equal or less than the 9 best alignments (after the seed extension) existed.

Duplication time may sometimes be inconsistent when the sequence similarity of a self-alignment from a duplication event is equal to orthologous interspecies alignments involving the parent and daughter copies of the duplication.