We enumerate the frequency of these different outcomes and discuss the results with respect to understanding speciation.
In addition to the network diagrams, one manner in which lineage 3D could be compared to the quasispecies in lineages 6H and 6L is to enumerate the frequency of the most common genotype.
There are several approaches to quantifying qualitative data, including enumerating the frequency of themes within a sample, the percentage of themes associated with a given category of respondent, or the percentage of people selecting specific themes.
In "The linear arrangement of six sex-linked factors in Drosophila, as shown by their mode of association," Sturtevant (1913) estimated the order and distance between each of five X-linked factors by simply enumerating the frequency of recombinants as a direct function of the number of regional crossover events.
DLN cell suspensions were cultured under limiting dilution conditions (from 10/well to 10/well) for each individual preparation, and culture plates monitored over a 21-day period for colony growth, to enumerate the frequency of tumor cells in the initial DLN samples (Fig. 1c) [ 22].
In "The linear arrangement of six sex-linked factors in Drosophila, as shown by their mode of association," Sturtevant estimated the order and distance between each of five X-linked factors by simply enumerating the frequency of recombinants as a direct function of the number of regional crossover events.
Ag85B peptide was the most immunodominant also in TB patients at T0 and at T4, as estimated by enumerating the frequencies of tetramer-specific CD8 T-cells; however significant differences in frequencies of epitope-specific CD8 T-cells were observed in TB patients before and after chemotherapy.
Since during the box-link construction, the structured motif occurrences are exhaustively enumerated and the frequency threshold is never used to prune the candidate structured motifs, RISO needs a lot of computation during this step.
We directly enumerate the relative frequency (p_{i,j}) that individual i appears in position j across the 13 motifs, which gives the motif position ratio profile (p_{i}=(p_{i,1},ldots2},p_{i,30}{i,30})) for individual i.
But when used alone, it cannot enumerate the NSC frequency.
