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The only solution was a small, separate entry structure.
(a) AODV-R RREQ structure, (b) AODV-R RREP structure, and (c) AODV-R routing table entry structure.
Rather than just having a one size fits all entry structure that allows for simply "reviews," PublicEarth applies the fields: colors, grade levels, mascot, and size.
Each cluster's InterPro entry structure was defined as the most common InterPro entry structure found in its member proteins.
Details of the database entry structure are described in Supplementary Methods.
An almost identical result was achieved by using counts of ORFs with an InterPro entry structure instead (data not shown).
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To define a suitable r the InterPro entry structures were used.
Counts of ORFs with InterPro entries or InterPro entry structures were normalised with the count of ORFs in a genome.
Principal Component Analysis (PCA) was used to find major sources of variation in counts of ORFs having either individual InterPro entries or InterPro entry structures.
We selected the 100 InterPro entries or InterPro entry structures with most extreme loadings (TOP 100) and visualised the counts of ORFs of the TOP 100 InterPro entries from Figure 8a as a heatmap.
PCA finds principal components (PC), i.e. major sources of variation between the species and positions of the original samples and the loadings of individual InterPro entries or InterPro entry structures on the PCs.
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