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The entire consensus results are shown below.
The entire consensus list of 59 genes from this analysis is given in Additional file 3: Table S3.
The entire consensus map had an average marker density of one marker per 10.7 cM, which was reduced to 6 cM when considering only the 6 main LGs.
The B-box mutant had the invariant cytosine and following guanine bases changed to GC, and the A-box mutant scrambled the entire consensus.
Because only full-length elements are competent for retrotransposition and the majority of L1Hs elements in the genome are 5′ truncated, we further studied changes in read coverage along the entire consensus L1Hs sequence.
Mapping of the read pairs from the 35 kb insert library (f ig. 1) provided unambiguous support for the methods used to close gaps including the contig end-joins and inferred repeats (supplementary fig. 1, Supplementary Material online) and confirmed that the entire consensus sequence is supported by read pair data.
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In an effort to highlight the entire molecular consensus characterizing the RF gene families, we provide in Table 1 the complete RF-defined molecular consensus patterns and their sequences used in this study for the validation of the retrieved gene sequences.
To investigate whether plaque forming capacity was regained via adaptive mutations in the viral genome, the entire genomic consensus sequence [except the genomic 5' and 3' termini, and the nucleotides upstream and downstream from of the polyC tract] of six mutant populations at passage 2 (series A and B for mutants V3, V19 4 and V15 9) was determined.
Coverage of PacBio reads across the entire chloroplast consensus sequence was relatively even, demonstrating that data from this platform does not suffer from % GC and other context-specific biases affecting data produced by short-read 'second-generation' sequencing platforms [ 8].
As an illustration, in D. melanogaster, if a given de novo method recovers 60 entire "knowledge-based" consensus sequences from a given genome, RCC would be 88% (60/68).
The well-characterized RAREs in the RARA and RARB promoters are highly similar, both consist of tandem direct repeat half sites separated by 5 bp (DR5) and only one base differs across the entire 12 bp consensus [47], [48].
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