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The structure ensemble was analysed using PROCHECK-NMR [ 32, 33].
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Data was analysed using R and BioConductor.
Transcripts differentially expressed in response to stimulation with both BCG and PPD were analysed using the Gene Ontology (GO) tool Onto-Express an analysis tool available in the Onto-Tools ensemble [ 18].
All data were analysed using FlowJo software.
Data were analysed using the Fiji Software34.
Spectra were analysed using AVANTAGE 4.54 software.
Data were analysed using QuantaSoft Software V1.7 (BioRad).
NMR spectra were analysed using CCPNMR Analysis48.
Data were analysed using GraphPathD Prism software.
Data were analysed using FlowJo software (Tree Star).
Images were analysed using Fiji (ImageJ).
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