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Every position in the genome was assigned to one of the following classes: Predicted promoter region including TSS (TSS), Predicted promoter flanking region (PF), Predicted enhancer (E), Predicted weak enhancer or open chromatin cis regulatory element (WE), CTCF enriched element (CTCF), Predicted transcribed region (T) and Predicted Repressed or Low Activity region (R).
For this purpose, an enriched element is proposed in this study.
In this study, the enriched element is used to simulate delamination-migration in a composite laminate.
Overall, the YY1 recognition site 5-ATGG/CCAT-3 was the most strongly enriched element in regions upstream of PP-increased DEGs (Additional file 13, part A).
The thermodynamic calculation is successful to a certain extent, agreeing with the experimental characterization well in terms of phase composition and the major enriched element of phases.
One way to improve the results is to subdivide the both sides of the enriched element into subtriangles in such a way that their edges conform to the geometry of the crack and the element (Mohammadi 2008).
Similar(50)
The motif enrichment analysis in the OsEULS3 regulon identified only two significantly enriched elements in the OsEULS3 promoter: a PALBOXAPC motif and a binding site for the Arabidopsis response regulator ARR11.
The results show explicit differences in scaling exponent between major elements and trace elements, between highly enriched elements (e.g., W, Sn, Mo and Bi) and relatively low enriched elements (e.g., Au, Ag and Cu), where β measures the strength of persistence (or the degree of roughness) of geochemical landscapes.
Patterns of chemical elements allow highlighting three behaviors (enriched elements, depleted elements and elements with complex behavior), depending on the landscape position of the profiles.
Contrarily, the lowland weathering profiles enriched elements are Fe, Ti, Co, Cr, Cu, V, Zr, Pr, Sm, Tb, Dy, Er and Yb; while depleted elements are Ca, Mg, K, Na, Mn, Ba, Ga, S, Sr, Y, Zn, La, Ce and Nd; and Si, Al, Mo, Nb, Ni, Pb, Rb, Sc evidenced complex behaviors.
It most closely approximates the true abundance, and recovers more differentially enriched elements in both simulated and real data.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com