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We use our algorithm to provide an enriched analysis of the variation of microbial species across different skin locations (a real environmental dataset [ 34]).
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There, he can run the enriched analysis by indicating a set of indirectly influenced genes.
For the trichome-enriched sample analysis of the merged triplicate LC-MS/MS data a total of 671 contig 'protein families' entries (see Additional file 3) were significantly matched while for the trichome-depleted and whole leaf sample analysis this number was slightly higher at 774 and 749, respectively.
The enriched GO term analysis of the identified DEGs showed that nine GO terms were significantly enriched in the SCP vs. SCUP comparison and 78 GO terms were significantly enriched in the SIP vs. SIUP comparison.
DNA sequence analysis of enriched phagemid panning isolates allowed identification of mutations conferring enhanced thermal stability.
Enzyme-mediated modification sites on numerous substrates could be revealed by large-scale proteomic analysis of enriched peptides.
Instead of analysis of enriched diseases from all interacting genes, ChemProt [3] and HExpoChem [4] focused on analyzing diseases for each chemical-interacting gene/protein based on protein protein interactions.
Clathrin has also been found at the mitotic spindle both through confocal imaging and proteomic analysis of enriched spindle fractions [9], [10].
Hierarchical analysis of enriched categories from the parent GO terms (levels 1 2) down to categories describing more specific biologic processes (levels 3 9) revealed a number of functions and pathways relevant to the biology of airway basal cells.
Further, analysis of enriched, evolutionarily conserved transcription factor binding sites in the promoters of co-activated genes begins to define the genetic regulatory network of renal endothelial cell formation.
Microarray analysis of enriched heavy:light nascent DNA in Saccharomyces cerevisiae has revealed a genomic view of DNA replication timing profiles: some regions of the genome are always replicated early in S phase, some in the middle, and others at the end, due to a strict timing of (efficient) firing at origins [4].
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com