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We investigate the effect of adding a drift term μ to walkers on the circle conditioned to start and end at the same position.
The preprocessing may generate several candidates that start at the same position or end at the same position.
This is further supported by more than 10 human ESTs that end at the same position and include a polyA sequence.
Additionally, we require the gap segments in the chimp and rhesus sequences to start and end at the same position (case I in Figure 7).
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Through genome-wide analysis, five motifs showed preferential accumulation of uncapped 5′-ends at the same position in Arabidopsis and rice.
Five motif groups that showed preferential accumulation of uncapped 5′-ends at the same position in Arabidopsis and rice and matched reported motifs or sequences are presented and discussed below.
Enrichment of uncapped 5′-ends at the same position around this motif was also seen in Arabidopsis AxIRP library generated by degradome sequencing although to a much lesser extent.
In addition, our genome reduction procedure makes it impossible to eliminate the effects of PCR bias as we expect reads to begin and end at the same positions.
Otherwise, the haplotypes that start and end at the same positions in all individuals can easily be converted into multi-allelic genotypes, with an allele for each haplotype.
Finally, it is highly significant that the L1750 construct ends precisely at the same position as separates PB2-N and PB2-C in influenza polymerase.
The differences in the T- and D-loops evidently compensate for the different tRNA sequences, thus ensuring that the anticodon ends and the CCA ends bind at the same positions.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com