Sentence examples for end alignment from inspiring English sources

PCR duplicates were identified based on read start and end alignment coordinates.

Paired end alignment against the mouse genome (Build NCBIM37) was performed using BWA (v0.5.8) [ 20] with default settings.

Anomalous paired - end alignment methods (PE) use reads that contain a break point in the unsequenced region between the paired reads.

The 30 G needle was then replaced with a 0.3 mm-diameter stainless steel insect pin to provide additional stability with bone end alignment preserved by an experienced surgeon and confirmed by x-ray.

Alignment of RNA-seq data was done using Bowtie2 (Langmead and Salzberg, 2012), using paired end alignment, seed length = 28, and max seed mismatches = 2. RPKM was calculated using cufflinks v. 2, with a gtf file for Homo sapiens, UCSC, hg19 obtained from http://cufflinks.cbcb.umd.edu/igenomes.html.html

Get a front end alignment every once in a while.

Predictions are clustered if they share the start, middle (m i d d l e = s t a r t + e n d 2 ) or end (alignment- coordinate, their length in balignment- coordinate and atheirst one of the folengthg condinions is true: The names of the transcription factor baseing sites pairscted are sisilar (notheonsamering upper/lower cand, spates, numbers).

Interestingly, we found that most of the aligners could support paired-end alignment for repetitive regions mapping excluding BOAT, GASSST, Gnumap [ 41], GenomeMapper, and SeqMap.

The aligner was run in end-to-end alignment mode.

Out of 102 million reads, 31million aligned to the transcriptome under single-end alignment mode.

Bowtie2 aligns longer reads and supports gapped, local, and paired-end alignment modes.