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Abundance predictions were considered correct if the range of abundances that a model predicted a species should obtain 95% of the time encompassed the observed abundance value.
The mean abundance of each rank was then calculated along with its 95% probability intervals, and predictions were again classified as being correct if these probability intervals encompassed the observed abundance value.
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However, the baseline SUXmax for this lesion was only 3.3, resulting in wide confidence limits for spurious change (−54 to 119 %), which encompass the observed % change and leads to reclassification as SMD.
This range encompasses the ratios observed in several mammalian groups [36], [38].
Analyses of gene networks encompassing the alterations observed between young and aged prostate stroma demonstrated a significant enrichment for inflammation pathways, the NF-κB program, and collagens, among others.
Moreover, the greater success of the neutral model derives in part because its abundance predictions are less precise, providing more variation within which to encompass the values observed for species in Eastern Wood.
As an example, Msh2 enters into heterodimeric complexes with Msh3 and Msh6, so it might be expected that the set of genetic interactions for msh2Δ would encompass those observed on deletion of both its partners.
A deletion of the entire chromosome 22 arm was observed in 9 cases, a distal deletion including C22orf2 was observed in 2 cases and an interstitial deletion encompassing the D22S315 was observed in one case.
By far the most frequent hits (28% for Air-1 and 35% for Air-2) were to the Alphaproteobacterium Caulobacter crescentus, a member of the same order, the Caulobacterales, that encompasses the Brevundimonas species observed repeatedly in the 16S rDNA clone library.
Orange symbols denote the skew values for modeled arbors in Figure 5B, which were chosen to encompass the skew range observed for most SAI arbors.
A positive correlation between CNVs and expression of genes encompassing the CNVs was observed, which suggested that the candidate CNVs may influence the susceptibility to MD through regulation of the gene expression.
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