Sentence examples for encode using from inspiring English sources

We now look at the encodings for preferred semantics which are easy to encode using the minimization statement of metasp.

For example, 37 sites were identified in 1% of human genome (ENCODE) using ChIP assays, which can be extrapolated to ~3,700 sites genome-wide [ 48].

Changes in gene expression were categorized on the basis of the functions of the protein which they encode using the MapMan software.

To test this, we measured for all genes the variation in splicing between K562 and GM12878 using cytosolic and nuclear RNA-Seq polyA+ data from ENCODE, using only junction-reads, to avoid contributions from RNAs stemming from overlapping enhancers (Methods).

This list was used to count reads aligning to MER48 elements from two replicate K562 transcriptome.bam files obtained from ENCODE using readcount v0.01 with all options set to default.

ChIP-seq data was downloaded from NCBI GEO or ENCODE using the GEO IDs or UCSC Accession IDs listed in Additional file 2. We performed a comprehensive comparison of our PBM model with several other methods that could be or have been used in predicting TF binding on real sequences.

Specifically, did ENCODE use the wrong definition wrongly in a consistent manner?

We have already seen that ENCODE uses an evolution-free definition of "functionality".

The six sequences are encoded using H.264 encoder with two sequence structures, namely, IBBPBB and IPPP.

The audio signal is subsequently encoded using a core encoder.

The data of each user are independently encoded using a turbo encoder with quadrature permutation polynomial (QPP -based interleaving [29].