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Although comprised of distinct sequences, the last 4 amino acids of both isoforms encode class I PSD95/DlgA/ZO-1 (PDZ) binding domain sequences (-X-(S/T -X-Ф, where X = any amino acid and Ф = any hydrophobic amino acid).
Interestingly, all of these genes (except gyrA) encode class I shock proteins, which are induced at high levels after a shift to a lower temperature (deaD is more than 8-fold up-regulated at 30°C) whereas class II shock proteins are induced a few-fold from their steady-state levels after a downshift in temperature [20].
Bacteriocin genes identified are predicted to encode class I and II bacteriocins.
As judged from completed genomes, many protists also encode Class I-like family members (data not shown).
We detected two group I introns in one gene comprising three ORFs (NIES39_L05970, NIES39_L05980 and NIES39_L05990) which encode class I ribonucleotide reductases (RNRs; Fig. 2).
The paralogous lipA genes (lipA1- lipA3) encode class 2 lipases that hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol, and free fatty acids [ 112].
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This can be achieved when a descriptor is capable to encode class-specific features and suppress unnecessary background information for the respective applications.
liguleless3 and liguleless4 encode class-I knotted1-like homeobox (KNOX) transcription factors that are duplicated within the grasses (Bauer et al. 2004; Kerstetter et al. 1994; Muehlbauer et al. 1999).
The basic idea is to construct an augmented term-document matrix by encoding class information as additional terms and appending them to training documents.
Evolutionary pressure by viruses is most likely responsible for the extraordinary allelic polymorphism of genes encoding class I human leukocyte antigens (HLA) and killer immunoglobulin-like receptors (KIR).
Distribution descriptor describes the chain length in which the first residue as well as 25, 50, 75 and 100% of amino acids reside for a specified encoded class.
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