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It is tempting to speculate that some ciliate introns may evolve into IESs by providing a nucleus for the evolution of extended repeats, which then lead to the elimination of the enclosed sequence during macronuclear development.
Let S be an RNA sequence consisting of nucleotides or bases A, U, C, G. S [ i] denotes the base at position i of the sequence S and S [ i, j] is the subsequence starting at position i and ending at position j in S. A base pair between nucleotides at positions i and j is denoted as (i, j) or (S [ i], S [ j]), and its enclosed sequence is S [ i, j].
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The class V (bootstrap 96%) enclosed sequences from Teleostei, Archausauria, Mammals and Insects.
Some of the enclosed sequences represent genes, namely ORF052 and the ORFs 106 to 109 within repeat regions RR1 and RR2, respectively (Fig. 7).
A step-wise increase in the P-value cut off caused the clusters A1, Ch, F1, F2, and M to merge in a supercluster (data not shown), suggesting a close relationship of the enclosed sequences.
Boxes enclose sequences for which we observed particularly strong patterns of cell type-specific methylation.
Subcluster A1a enclosed solely sequences of different Mycobacterium species, whereas A1b and A1c both covered sequences of various Actinobacteria.
Target sequences of shRNAs used in this study, however, indicate that the encoding mRNA encloses common sequence parts with CSPP and CSPP-L transcripts upstream of the C-terminal domain encoding region.
The aim of this work is to find a tube which encloses a sequence of points representing a shape that uses a set of linear static models by set-membership approach.
The exonization of originally intronic LRTS requires the presence of a pair of potential splice sites, enclosing a sequence with no stop codon in the appropriate reading frame.
First, we calculate local scores for the possible assignments of the fly identities in a subsequence (σ i,τ i,σ i+1), using only information in the occluded sequence τ i and its two enclosing unoccluded sequences σ i and σ i+1.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com