Sentence examples for enclosed genes from inspiring English sources
In yeast, protein sequences encoded by dubious ORF and transposable-element enclosed genes were removed.
Clusters IV, V and VII enclosed genes with the highest differences in gene expression when log2 intensities were compared between unripe and ripe fruit.
Clusters I, II and III was composed by genes with high levels of expression while clusters VI and VIII enclosed genes with the lowest levels of expression during papaya ripening.
The clusters can be seen as functional modules representing biological processes the enclosed genes are involved in while the DETFs resemble measured genes for which the corresponding protein is known to exhibit transcription factor activity.
Of these five SNPs, three (PZE-105073248, PZE-105073275, and PZE-105073274) were clustered in a 131 kb region, which enclosed genes encoding MYB-related (MYB) transcription factor and squamous promoter binding protein (SBP) transcription factor [Additional file 3: Table S3].
Each such class is defined by certain properties, e.g., the degree of the edge enclosing genes, or the type of an edge (activator or repressor).
Cluster D (199 genes) and E (138 genes) enclose the genes under-expressed when the growth rate increases.
However, it has been proposed that these data can be used to identify key genomic regions, which may enclose causal genes under the assumption that disease-associated gene expression changes are caused by genomic alterations.
Using a similar approximation, Pedemonte et al. [ 64] identified in mice a specific molecular signature of MSC in the hematopoietic niche enclosing 381 genes, showing for example enrichment in WNT pathway genes that we also observed enriched in our global profile.
As shown in Additional file 2: Table S2, 157 genes expressed more abundantly in Yorkshire were clustered to the gene ontology (GO) term membrane enclosed lumen, 52 genes to GO term RNA processing, and 40 genes to GO term transcription factor binding pathway following DAVID analysis.
A gene coding for a Drosophila Sec24-like protein, which interacts with Sec23 [38], is located in the gho-containing interval (CG10882) enclosing 16 genes (Figure 11C).
