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The KNIME access (Fig. 4a) workflow enables the database to be queried by drug name, active ingredient, FDA application number, SMILES, sub-structural and structural similarity search (Additional file 12).
The link 'Search' enables the database to be browsed in order to find all Arabidopsis genes that are to be used as the queries.
As such, this assessment, along with the large number of actions filmed, enables the database to provide a range of actions varying on a continuum of conveyed trait intensity.
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The interest and contribution of the network partners have enabled the database system to constantly grow, and new modules for accommodation of passive sampling, indoor environment, bioassays monitoring, antibiotic-resistant bacteria (ARBs), and antibiotic-resistant genes (ARGs) data are now under development.
Perl scripts enable the database to be queried against either peptide or nucleotide sequences; when an identical match is not found, a BLAST search (17 ) can be performed to identify the nearest variant and family.
We note, however, that the experimental product ions were generated by enabling the database search with a fragment ion tolerance of 1 amu, thus contaminant product ions within this mass window are possible.
The final item in the Action menu, Pubchem, enables the Pubchem database to be searched for an exact match or for neighbourhood generation.
Access to data on some 550,000 individuals (constituting some 10% of the Danish population) over a 10-year period enables the CopDiff database to assess both common and rare disease outcomes.
From these, ElectroShape descriptors were created that enable the fast database searching.
This has enabled the Pfam database (Finn et al., 2006) to provide access to their protein sequence alignments using ProServer to serve data directly from the underlying MySQL database (see http://das.sanger.ac.uk/das/pfamAlign).sanger.ac.uk/das/pfamAlign
The web interface enables the user to browse the database content, analyse it online, download data sets for offline analysis, and to submit data to the database.
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