In our work, we employed the position-dependent gap penalty model in the dynamic programming, which operates as follows: No gaps are allowed in the region where the predicted secondary structure and the secondary structure of the template are in the same state of helix or sheet; The end gap penalty is neglected; Affine gap opening (go) and gap extension penalties (ge) are applied to other regions.
Instead of using the locations of real BSs, we employ the positions of VSs.
One of the first attempts to handle the routing issues in city scenarios was the geographic source routing (GSR) [4] which employs the position-based knowledge with the topological knowledge of the network.
For cleavage site prediction, we employ the position-specific scoring matrix (PSSM) ϕ C proposed by Dönnes et al., which uses four C-terminal amino acids and two N-terminal amino acids to predict a cleavage site.
A nectar source corresponds to an employed bee; the position of a nectar source represents a possible solution of optimization problem and its value depends on many factors, such as the degree of proximity between the nectar source and honeycomb or the degree of nectar source concentration and so on.
Managers have also employed the same basic slope position and aspect categories we use here when assessing potential soil moisture in Sierra Nevada forests (Parker 1982).
Later, Mr. Teeter employed the "Rose Garden strategy," which positioned the incumbent in overtly presidential settings during the campaign, but kept him largely out of direct political engagement with his opponent, Gov. Jimmy Carter of Georgia.
In 2000, the Xinjiang Archaeological Institute rediscovered a very important Bronze Age site, the Xiaohe cemetery, by utilizing a device employing the global positioning system.
We have employed the freely available target prediction, position-weighted local alignment miRanda algorithm (standalone version 3.3a) [ 80, 81] and the MapMi webserver (version 1.5.0-build 01, release March 2012) (http://www.ebi.ac.uk/enright-srv/MapMi) [ 83] to identify candidate miRNA target sites in 3'-UTR regions of 454 reads by base complementarity, and putative miRNA loci, respectively.
Avram Grant, the West Ham manager, has limited options at left back, with his only specialist, Hérita Ilunga, out with a leg injury and the central defenders, Danny Gabidon, who is currently injured, Tal Ben Haim and Jonathan Spector, plus Luis Boa Morte, a midfielder, among those he has had to employ in the position.
