Sentence examples for employed alignment from inspiring English sources

Remarkably, when intact sequences with HPAA tracts were employed, alignment with ClustalW solely resulted in markedly high support for the exclusive clustering of lamprey EmxA and –B.

Others employ alignment strategies where phylogenetic information is derived by the identification of paralogues [14], [15].

In a second phase, we increase the quality of the resulting clusters by employing alignment methods to filter away inconsistent elements.

In BlockClust we do not employ alignment-based techniques to compare block groups, as we would incur in high computational costs.

To reduce the number of false indels arising from wrong alignments, we employed sequence alignment programs based on structures to perform pairwise alignments of non-redundant structures in each family.

We also employed "Multiple Alignment Using Fast Fourier Transform" (Katoh and Kuma 2002) as an alternative method of alignment, but found no difference in our findings from implementing the "classic" methods of alignment (data not shown).

Since strictly secondary-structure-based alignment for the two rRNA genes was impractical for the large dataset, we employed machine alignment instead, which would minimize erroneous assessment of the positional homology of the rRNA molecules.

Therefore we employed an alignment procedure that uses a linear Hidden Markov Model (HMM) as implemented in the software SAM (Sequence Alignment and Modelling system) [ 84] for separate alignments of the three data sets.

In this step, we employed the alignment of BLASTN to obtain the list of read mapped to a pre-miRNA.

To overcome the problems associated with global alignment, we employed BLAST-based alignment to calculate pairwise identities of genome sequences.

In addition, the sequence alignment algorithm employed to align NGS reads played a significant role in the analysis of the data and the resulting mtDNA haplotypes.