Sentence examples for empirical sequencing and from inspiring English sources

A combination of empirical sequencing and retrieval of unannotated Genome Survey Sequence database entries was successfully used to construct a full-length representative of the Diaspora family in Glycine max.

Specific fields (base sequence and qualities) within aligned reads (BAM records) from the Illumina sequencer were manipulated in silico to introduce the clinically relevant DNA lesion pattern within the context of empirical sequencing errors and sample-specific proximal variants.

This underscores the utility of using ORP to recover an empirical sequencing error rate and minimize technical artifacts introduced by the sequencer.

Second, we used 764 20 bp tiling probes spanning non-repetitive regions of the ~16 kb Tamias complete mitochondrial genome, which enabled us to determine sequence contamination and empirical sequencing error rate.

We fitted a Hill Function to each empirical sequencing saturation curve to estimate the asymptotic identifiable unique locations.

To quantify this contribution, we assessed the proportion of RAD tags that can potentially be recovered unambiguously after empirical sequencing.

Thus, rather than assuming an identical pre-determined fragment size for all fragments and samples, we estimated the fragment size distribution for each sample from the empirical sequencing data.

Builds a distance matrix from global pairwise alignment of both anchor and empirical sequences combined, using the same methodology as in building the reference topology earlier.

This bias which is apparent under both controlled simulation conditions and in analyses of empirical sequence data also makes BI less efficient and less robust to the use of an incorrect evolutionary model than ML.

The novel mature miRNAs have high complementarity with their predicted target sites and meet empirical sequence parameters for miRNA∶target recognition such as no mismatches at position 10 and 11 of the 5' end of miRNAs and no more than one mismatch at positions 2 12 (Figure S6) [45].

Therefore, and in order to validate the method, we selected 4 isolated yeasts and sequenced the first-round PCR products (NCBI accession numbers KC869927, KC869928, KC869929, and KC869930) to compare these empirical sequences to those in GenBank by using the empirical sequences as BLAST queries.