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For instance, KEGG emphasizes metabolic and biochemical pathways; GO annotations, while having some phenotypic content, emphasizes molecular function, cellular component, and biological processes, while MSigDB [ 8] emphasizes gene expression signatures.
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We can also see that mAPC cannot gain much improvement under high FP ratios, because when FP ratio is very large, motif binding information cannot provide strong support; thus for cases with high FP ratios, the trade-off parameter λ (see Equation (4) in Methods) needs to be tuned to emphasize gene expression data more than motif binding information.
It should be emphasized that gene expression is a phenotype that changes in response to the environment.
Pairwise volcano and scatter plots emphasize the gene expression differences between each sample (Supplementary Material, Fig. S5A and B).
Transcription profiling of early embryos emphasizes that differential gene expression is a fundamental control mechanism of development.
Both measurements were adapted in order to combine the Pearson correlation and the minimal degree to one joint function that would emphasize genes with a high expression profile correlation and which are tightly linked within a pathway.
These findings re-emphasize that the gene expression profile mediated by a gene vector is not solely reflected by its biodistribution profile but also depends on factors like intracellular processing, promoter activity and vector clearance mechanisms.
This time point was chosen as the mesocarp and exocarp tissues do not undergo lignification and, therefore, would emphasize stone-related gene expression.
Samples collected at the TH stage were compared to the TH-7 and TH+10 stages respectively in order to emphasize evolutions of gene expression around the TH stage.
Also we would like to emphasize that the gene expression patterns for the 192 mg/kg, 24 h in vivo TNT treatment and the 24 h in vitro TNT treatment are similar.
Here, five more stages viz, Y-leaf, SAM (shoot apical meristem), P1-I (< 2 mm panicle), P1-II (0.2 to 0.5 mm panicle) and P1-III (5 to 10 mm panicle) have been added to emphasize changes in gene expression patterns during initial stages of panicle differentiation and floral primodia emergence in addition to stages of floral organ- and seed development.
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