Sentence examples for embedded in the alignment from inspiring English sources

Unfortunately, most methods require at least two structures to be embedded in the alignment, a condition rarely met when dealing with standard datasets.

If a particular HSP appears to be part of an interesting matching pattern (e.g., gene duplication or inversions), users can easily retrieve the actual sequence segment in the HSP by clicking the corresponding buttons embedded in the resulting alignment page (fig. 1g).

The query and hit coordinates of each HSP (i.e., where the matching region starts and ends on the query and hit sequences) are embedded in the BLAST pair-wise alignment.

To help users perform sequence alignment, BLAST was embedded in the database using the wwwBlast program (v2.2.26) to provide a graphic user interface through the Web forms (26).

Multiple sequence alignment and phylogenic analysis were performed by the neighbour-joining (NJ) method embedded in the Mega 5 software (Tamura et al. 2011).

We evaluated the alignment accuracy and computational cost of nine different multiple sequence alignment programs with the BAliBASE dataset and discuss the relevance of some implementations embedded in the programs algorithms.

"He is absolutely embedded in the game.

Cooking is embedded in the Henderson culture.

But embedded in the narrative are clues.

He is deeply embedded in the culture.

Silver was embedded in the flesh.