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Additional File 1 includes pathway annotations for the 16 candidate genes that were eligible for annotation with Ingenuity® Systems' Pathways Analysis (IPA, ) software.
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These probe sets matched to 427 known genes in IPA, of which 291 were eligible for functional annotation.
These probe sets were found to match 11777 known genes, of which 7505 were eligible for functional annotation using Ingenuity Pathway Analysis (IPA).
Column (a) gives results for an IPA analysis of the candidate genes, and (b) shows their corresponding annotations when the 299 blue module genes were analyzed (where 212 of the blue module genes were eligible for pathway annotation in August 2008).
Note that among the genes under selection, only those associated with at least one functional annotation in IPKB were eligible for functional analysis.
Figure 21 ESC training for annotation.
Section 'Annotation similarity measure for annotation graphs' presents our approach.
Provide a system for annotation.
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