Sentence examples for elements were searched from inspiring English sources

Repeated elements were searched for using PipMaker [62], REPuter [63], and FUZZNUC from the EMBOSS package [60].

EST sequences with predicted SECIS elements were searched against NCBI genome and non-redundant nucleotide databases to assess genomic sequences and against NCBI EST database to examine splicing and alternative splicing events.

Repeated sequence elements were searched using REPuter [ 25].

Plant cis-acting regulatory elements were searched by the PLACE database [ 60].

First, the elements were searched for a reverse transcriptase region using BLAST.

Repetitive elements were searched using species-specific databases available as option settings in RepeatMasker [ 66] and Censor [ 67, 68].

Our linking approach style relies on three works [8, 12, 13]: from a list of elements of a given API, the names of these elements are searched for within content of given threads (related to the API), and when a match is found, a link is created between the thread and the API element.

There are two general approaches to link documents with code elements: (1) from a list of code elements, code elements are searched for in documents, and when an element is found, it is linked with the document [8, 13], and (2) from documents, code-like terms are identified and mapped to their corresponding code elements and then, the documents are linked with the code elements [37, 54].

The similarity between Xist exons and mobile elements was searched for using the same programs and parameters.

Evidence for repeat-induced point mutation (RIP) within the transposable elements was searched using RIPCAL [ 24], but this mutational bias was not observed in the M. phaseolina genome (RIP index 0.87).

This list (see Section 6 in the Additional file 1), containing 3,949 peptides, serves as a look-up table, whose elements are searched on all reads or contigs of the metagenome.