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The coordinates of extra- and intracellular elements were inferred based on the results of crystal structure modeling of GLUT1-4 homologues [ 52].
The order and strand orientation of the three elements were inferred from these cases and this pattern was used to identify the composite element in 458 fully sequenced NLE BACs downloaded from the National Center for Biotechnology Information (NCBI) nucleotide database (http://www.ncbi.nlm.nih.gov/nuccore).nih.gov/nuccore
Transposable elements were inferred according to the results of hmmscan against GyDB 2.0 (2.3.2) with an E-value cut-off of 1.0, BLASTP against the NCBI non-redundant (nr) protein database (http://www.ncbi.nlm.nih.gov) with an E-value cut-off of 1E-10, and InterProScan against the InterPro database with an E-value cut-off of 1.0.
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The proposed approach is "non-supervised", i.e., both the number of clusters and their elements are inferred from the data distribution in a multi-dimensional metric space.
Some unstructured elements within the LRR domain were inferred through circular dichroism (CD) spectrometry.
(19213 repetitive element models were constructed, 3619 nested insertions were inferred, and 294 intra-element LTR pairs were aligned).
(18880 element models were constructed, 3673 nested insertions were inferred, and 393 intra-element LTR pairs were aligned).
Putative ORFs related to mobile genetic elements were predicted and their boundaries were inferred with the assistance of GenomeMatcher software.
Using the Multiple Em for Motif Elicitation (MEME) Suite of motif-based sequence analysis tools, 26 two vitamin D-responsive elements (VDRE) positional weighted matrices (PWMs) were inferred from VDR-ChIP sequencing data recently published by Heikkinen et al. 23 and Ramagopalan et al. 24 (see Fig. S1).
Because in some mare and highland samples, the δ37Cl values of apatite are positively correlated with Cl contents and bulk compositions of trace incompatible elements, it was inferred that the Cl isotopes were mixtures from two distinct reservoirs: one is the lunar mantle with δ37Cl of ~0‰ and the other is urKREEP with δ37Cl of ~+30‰9,10.
Therefore, the potential activity of these elements could be inferred [ 13].
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