Sentence examples for elements were downloaded from inspiring English sources

Repetitive elements were downloaded from UCSC (rmsk table hg38).

All genomic positions of CGIs, transcripts and repeat elements were downloaded from the UCSC genome browser.

Consensus elements were downloaded from RepBase.org, including the human-specific L1 element L1Hs.

In general, the pathway information and connections between pathway elements were downloaded and imported from KEGG Database.

The classes and characters of major repetitive elements were downloaded from RepeatMasker [ 24], and the tandem repeat sequences were identified using the Tandem Repeats Finder program [ 26].

GERP++ (referred to as GERP in the main text) scores, which measure evolutionary constraint based on the number of substitutions in orthologous sequences of up to 34 mammalian species [ 9, 13], and elements were downloaded from the Sidow laboratory website (http://mendel.stanford.edu/SidowLab/downloads/gerp/index.html).html

miRNAs located on genomic transposable elements (TEs) were downloaded from a recent study of Piriyapongsa and collegues, reporting the list of miRNAs putatively and/or validated to be co-located with TEs [ 14].

RefSeq genes and repeat element annotations (RepeatMasker) were downloaded from the UCSC genome browser database (mm10) [ 72].

A total of 51,369 non-transposable element-related rice protein sequences (Release 5) were downloaded from the Rice Genome Annotation of TIGR (The Institute of Genomic Research, ).

The chromatin immunoprecipitation sequencing (ChIP-seq) peaks for EZH2 occupancy and presence of H3K27me3 were downloaded from the Encyclopedia of DNA Elements (ENCODE, Release 3, hg19 assembly) [ 38].

The 1 kb sequences upstream of the differentially expressed genes were downloaded from the TIGR rice genome database and used for predicting the cis-acting regulatory elements.