Exact(5)
For the adjacent regulatory elements we observed several variants in the cis2 that could affect the regulatory properties, defining three haplotypes: the related hap1a and hap1b, and the hap2 (see SOM for details).
At L1 and mSat elements, we observed the presence of dispersed hemimethylated CpG dyads.
The roo and rooA elements we observed are in various states of activity.
To confirm the identification of the NGP elements, we observed several specimens and used photographs from the NSG's DNA sequence database (http://nymphalidae.utu.fi/db.php).utu.fi/db.php
Unlike the pattern observed in DNA transposons (Schaack et al. accepted), for the DIRS elements we observed a higher number of singletons (loci occupied in only a single isolate) in cyclically-parthenogenetic isolates relative to obligate asexuals (for Dpul_D5 only; 17 versus 13). 1 n = 41 cyclically parthenogenetic isolates, 44 obligate asexual isolates; df = 83.
Similar(55)
When the size of facial elements is considered relative to the size of postcranial elements, we observe in the Palauan sample a pattern of reduction in the craniofacial skeleton similar to that seen in LB1.
In Table 3 we have selected a limited number of genes from groups B and C which show a significant and previously unknown effect on regulating accumulation of specific elements (Ca, Na, Mg, K, S, Mo, Mn, Cu, and Cd), or groups of elements we observe to be related (e.g. Mg & P, Mn & Cd) in the yeast ionome.
Nevertheless, even after outcrosses to minimize genetic background differences between mutants and two different revertant strains (bearing excision chromosomes lacking the P element), we observed small, albeit statistically significant, effects of the E74BG01805 mutation on the activity rhythm.
Focusing on Ty coding-elements, we observed that contrary to what occurs with the LTRs, the patterns of locus occupancy are mostly either specific to a given strain or shared by just a few strains (only 18 out of the 130 occupied loci are common to more than five strains).
Consistent with our idea that the 5′end of the bmf mRNA contains features of an IRES-element, we observed a clear shift towards the expression of the second fluorescence under these conditions (sFig. 3c) that should not become visible, if both proteins were synthesized in a strictly CAP-dependent manner.
Only in the case where methionine is utilized both as sulfur and nitrogen source and methionine is the limiting element, we observe that the expression of the corresponding genes is not reduced (but even slightly induced, mimicking the (known) response under sulfur limitation).
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