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To determine the promoter elements, we analyzed the sequences from 60 nt upstream to 10 nt downstream of each TSS.
Many of the genome elements we analyzed are known to be composed of clusters of low-level entities.
To determine the effect of landscape elements we analyzed Wood Avens (Geum urbanum L). populations within three 4×4 km2 agricultural landscapes in Germany, Switzerland and Estonia, which differ in levels of land use intensity and habitat fragmentation.
To identify brain-specific regulatory elements, we analyzed conserved synteny regions of PK genes predominantly expressed in the nervous tissue with the DiRE program.
To determine if the two zebrafish IGFBP-2 genes have associated with divergent regulatory elements, we analyzed a 2 kb fragment upstream of the cap site in igfbp-2a and igfbp-2b.
This occurred only for 0.7percentt (53 out of 7914) of elements we analyzed.
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For each L1 element, we analyzed the genomic regions extending 100-kb upstream of the L1 start position and 100-kb downstream of the L1 end position.
To ascertain whether the low rate of recombination would affect the rate of rearrangements and gene movements on the F element, we analyzed the placement of D. melanogaster F element genes in the other Drosophila species.
In regards to the last element, we analyze the recovery conditions with respect to an experiment design.
These sequences do have strong protein coding potential and in this sense stand out from the abundant exonized Alu (and other) elements that we analyzed.
After constructing the finite element model, we analyzed the absorption coefficient graphs of perforated plates with two-sized holes and four-sized holes according to the separating partition types: no partition, rigid partition and porous partition.
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