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T box riboswitches are cis-acting RNA elements that bind to tRNA and sense its aminoacylation state to influence gene expression.
The 3' UTR (untranslated region) of the AR contains sequence elements that bind to proteins involved in regulation of mRNA stability.
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Assuming an additive effect of each element, the intensity of the regulatory input to gene i, x i, was calculated as the sum of the effects of all of the trans-elements that bound to the cis-elements of gene i.
KLF9 is a transcription factor that binds to GC box elements of many promoters.
SP1 is a zinc-finger transcription factor that binds to GC-rich elements [ 87, 88].
Ubiquitin-binding domains of the gene ubiquitin D (UBD) are modular elements that bind non-covalently to the protein modifier ubiquitin.
Functional genomic annotation using data derived from breast cancer cell-line models indicates that these SNPs localise to putative enhancer elements that bind known drivers of hormone-dependent breast cancer, including ER-α, FOXA1 and GATA-3.
RNA decoy molecules attempt to compete with specific HIV-1 RNA elements that bind viral proteins as part of the replication cycle by overexpressing their RNA homologs.
As Fur-family repressors often regulate genes involved in iron utilization [38], we attempted to glean more information by identifying the DNA elements that bind Fur-family regulators, namely Fur boxes (see methods).
"The fact that you accept those differences doesn't mean you forgo the common elements that bind us all together".
While elements that bind part of our system might weaken, others can grow stronger.
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