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The representative contigs were selected as the most conserved considering their similarity scores with known elements obtained using RPS-BLAST and three alignment profiles: pfam07727, pfam00078 and cd01650.
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The Hamiltonian matrix elements were obtained using models with periodic boundary conditions imposed both along and across the interface.
On a shorter time scale, the relationship between autumn PWV and ground meteorological elements was obtained using the composite analysis approach.
The nonlinear properties of the link elements were obtained using the generated p-y curves from the FD solution by LPILE.
The nonlinear properties of the link elements were obtained using the generated p y curves from the FD solution by LPILE (Fig. 5).
Summary statistics for tree nodes representing key ancestral sequences (for example, the MRCA of the OW and NW begomoviruses or the MRCA of the Nicotiana species carrying the different GRD elements) were obtained using Tracer v1.5.
The TA-rich elements were obtained using the program PlantCare.
Illustrations of genome elements were obtained using the soybean genome browser at soybase.org.org
Multiple alignment of 48 transposase sequences of PIF/Harbinger-like transposable elements was obtained using T-Coffee [ 36].
Identical results with the LIMD1 and CD11b DNA elements were obtained using exogenously transfected pcDNA4 PU.1 in HEK 293T cells (Supplementary data Fig. 3).
Evidence of repeated recent (<30 years) chromosomal gain and loss of three <span class="lh">elements was obtained using time-scaled ClonalFrame trees (Didelot and Falush 2007; Didelot et al. 2012) constructed from large numbers of same ST genomes (fig. 8).
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