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Thus, operations to add, remove and list A elements are mapped to the same operations on related B elements.
In the Fig. 6, these UML elements are mapped to elements which compose the Petri net metamodel (Fig. 5) in order to transform the State machine diagram into a PrT Petri net diagram.
The strength of the network approach comes from its ability to cast the essential features of increasingly complex systems into a manageable form - in the simplest representation, interacting elements are mapped to nodes that are connected by links if they are known to interact.
Moreover, relations of model elements are mapped to the graph database, i.e. a species node is connected to a compartment node with isContainedIn.
As mentioned above, positional elements are mapped to genomes, thus if two independent articles describe regulation of the same gene, the data contained in these articles will be interlinked via this gene, but sites and other experimental data will be reported as independent entries.
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Particularly, the operation to list A elements is mapped to the operation to list all of related B and C elements.
These elements were mapped to 2 kb upstream promoter regions of all genes for Oryza sativa MSU RGAP 7 (Kawahara et al. 2013) using cluster-buster with –c option set to 0 (Frith et al. 2003).
LTR- Gypsy-RtPc1 and LINE- Tad-RtPc5 elements were mapped to the chromosomal bands of isolates Pb01 and Pb18, which had been separated by PFGE.
In our database, each of the cis-regulatory elements is mapped to a locus in chromosomes of the mouse genomes as defined by the ENCODE project.
BIND fields that could not be mapped to specific PSI-MI elements were mapped to general purpose elements in PSI-MI where possible (such as the generic attribute/value data type) or not mapped.
The flavor and status attributes of HwConfig element, are mapped to the flavorId and status attributes of Server element.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com