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Information on materials, their stratigraphy and geometrical data of architectural elements are indicated in the database.
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The proportions of the pennant's component elements were indicated in the annex, with the actual dimensions remaining to be decided by the Armed Forces Ministry and the Interior Ministry.
The fraction of each repeat element is indicated in parentheses.
Annotation of the putative cis-elements is indicated in the figure and explained in detail in the text.
Note that binary vectors can be seen as representations of sets, where included elements are indicated as 1-s in the vector.
Length length of the complete element in bp; LTR 3′ and LTR 5′ their coordinates in the complete elements are indicated; insertion time this is the estimate in million years; TSD sequence of the target site duplication n/a Not available, T truncated, TSD target site duplication.
ChIP-seq signal accumulation in the repeat elements are indicated as log2 fold change against input for comparison (left and middle panels).
where the error message indicates that not all input elements could be fit into the requested scheme (these "excess" elements are indicated with a quality value of 2 in the QualArr2 array).
Crystallographic symmetry elements are indicated by their printed symbols as defined in the International Tables of Crystallography [35].
The secondary structure elements are indicated.
Gene and transposable element (TE) annotations are indicated in Figure 2. In total, 143 non-TE related coding regions were annotated, which corresponds to a gene density of about one gene per 6 kb of genomic sequence (Table S1).
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