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Putative N regulatory elements were identified to reveal possible new components of the regulatory network for plant N responses.
Based on our interpretation-based examination of the evidence that is currently available from strong and moderate reviews, five elements were identified to be effective in all domains.
As previously noted, Gypsy elements were identified to be located upstream of the PKS1, OXI1 and LAM1 genes, downstream of PKS2 gene as well as between the RED2 and RED3 genes in the C. heterostrophus race O genome; Copia element was located downstream of the TOX9 gene in the genome.
In COX-2 promoter, numerous cis-elements are identified to exert transcriptional control of COX-2[ 22, 44].
Inductively coupled plasma mass spectrometry atomises and ionises elements in a sample and the isotopes of the elements are identified by their mass-to-charge ratio.
This measure was first used in feature selection by a user-specific 1-bit RL-based discretization scheme [12] to sort the feature elements which are identified to be reliable.
The top seven elements are identified below.
Helitrons are characterized by a 5′ TC, 3′ CTRR, an AT target site, and a 3′ 18-bp palindrome; elements are identified according to >80% similarity at 3′ (family) and 5′ (subfamily) 30 bp (Yang and Bennetzen 2009).
Several regulatory elements were identified as essential factors to allow for full promoter function.
Also, many transposable elements were identified in close proximity to RGHs in the switchgrass fosmids.
For example, 27 putative IS5 elements were identified, although most are likely to be inactive due to mutations or frameshifts.
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