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Since both training and test sets contain documents of the same type (abstracts vs. full texts) annotated with the same annotation guideline, we can conclude that the NER task over patent full texts is more complex than that on patent abstracts.
The Linnaeus corpus contains 100 full text documents annotated with annotations for organisms, all linked to identifiers in NCBI taxonomy (http://www.ncbi.nlm.nih.gov/taxonomy).nih.gov/taxonomy
PathText provides a user friendly interface by which one can freely move from pathways to relevant articles, or to parts of full papers annotated by biologists during the model construction phase.
However, the images are limited to adynamic jpeg and tiff files that illustrate limited fields selected by the photographer and do not display or annotate the image in full context.
Read the full text, annotated with our observations.
We have a RESTful API that enables users to directly search our database of 12 million chemical structures, 20 million full text annotated patents and 70 million patent abstracts.
The full automatically annotated dataset is provided in the simple tab-separated values-style standoff format first introduced in the BioNLP Shared Task (Kim et al., 2011) and used in many domain tools and resources.
We trained TEES in a gold-standard set of 20 full text annotated documents, 10 on human embryonic stem cell research (hereafter called CF-hESC), whose entities annotations have been previously published (46) and a new set of 10 full texts documents on kidney stem cell research (hereafter called CF-Kidney).
However, the F-measure values of both tmChem and ChemSpot were very close on full patent corpora, annotated using guidelines which differ from those of the systems' training sets.
Finally, a final set of 50 full texts was annotated for building the test set.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com