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For p = 0.05, though, excess heterozygosity had negligible effect on the variant flagging and genotype-call error rates.
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It was also noted previously 6, 9 that weighting could be based not on allele frequency, but on the presumed effect of the variant on gene function.
The effect of the variant on AE3 function has not been assessed.
Each genetic variant was given a weight equal to the effect of the variant on height or BMI reported by the previous GWASs [ 23, 24].
For these replicated variants, all other genetic studies were identified to estimate the effect of the variant on diabetic nephropathy, irrespective of p values.
This software follows a specific algorithm in order to determine the possible functional effect of the variant on the gene (i.e., intronic enhancer, missense mutation) and the associated risk of having the specific SNP variant.
Ensembl ranks these "consequence types" in estimated order of importance, including any effect of the variant on the sequence of the final protein product.
This is highly indicative of how low the effect of the variant is on the genetics of ET in the French-Canadian population.
The main effect of the variant genotypes on the risk of lung cancer was estimated by odds ratios and their 95% confidence intervals using unconditional logistic regression analysis.
For each variant, we use a software tool to determine the likely effect of the variant based on the transcripts (or other genomic features) that overlap the variant's position.
Further studies on the effect of the variants on gene expression (eQTL studies) are required to understand how they affect biological pathways.
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