AliView is intended to be a simple easy-to-use alignment editor, and not a complete program for phylogenetic analyses.
AliView also works as an easy-to-use alignment editor for small as well as large datasets.
Compared to the transmission setup, which requires optical alignment from free space to fiber, the reflection spectra measurement has additional advantages such as: (1 Very easy to use, no optical alignment is needed, (2) remote sensing capability as optical fiber probe can go into human body or placed in harsh environments, and (3) in vivo detection of antigens and biomolecules.
The fiber tip sensor with reflection setup is very easy to use with no alignment needed, and can be used for in vivo detection as optical fiber can be inserted into human body.
The tool presented here, ChromA, is immediately accessible for pairwise alignment and easy to use via the web frontend (see Supplementary Fig. 1) and as a web service.
The most common procedure used in North America for computing the column effective length factor K is the Jackson Moreland Alignment Chart, which is easy to use even though it is based on cumbersome equations.
Future releases will support alternative alignment algorithms, SNP calling, and an easy to use web based GUI.
In order to compare the increasing number of structures in the PDB, flexible geometrical alignments are needed, that are reliable and easy to use.
NanoOK provides comprehensive alignment-based analysis of Nanopore reads through a simple, easy to use interface.
Although no single assembler performed best on all our criteria, Newbler 2.5 gave longer contigs, better alignments to some reference sequences, and was fast and easy to use.
It is a simple, easy to use computer application that generates similarity/identity matrices for protein sequences without needing pre-alignment of the data [ 54].
