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A 'test-impact' data collection form was attached to each typing result returned (see Additional file 1).
Phylogenetic tree of propagating strains for each typing phage and sakai as a reference.
This index was calculated for each typing method, as well as for the combination of both methods.
As a discriminatory index, Simpson's index of diversity was calculated for each typing method used to differentiate all Y. ruckeri isolates.
The discriminatory power of each typing method was also computed and compared by the Hunter-Gaston discriminatory index (HGDI) [ 53, 54].
The actual number of characters analyzed by each typing method is very different; while AFLP relies on restriction sites of 4 or 6 bp, a given MLST locus includes 300 600 bp.
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