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This multiple sequence alignment along with the structure for each template are fed into model generation tools which construct models.
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The width d for each template is 6a, and the distance s between each template is 10a.
Each template was shaped into a 1 cm×2 cm rectangle.
In a system using the proposed scrambling, each template is scrambled by an independent key sequence.
Each template is then used to match any chunks in the document, which are then regarded as completed and unavailable to other templates.
Each template was analysed in triplicate.
Models based on each template were generated using NEST software [29].
Models based on each template were constructed using the program NEST [29].
Each template was designed to test analogs of 4 of the natural amino acids (Figure 2, a e).
In threading, a target protein sequence is aligned with a library of structural templates from known structures in the Protein Data Bank (PDB), and a sequence-to-structure alignment for each template is evaluated to identify the fold with best "fit" [28], [40], [41].
The concentration of each template was determined fluorometrically (Turner Biosytems, UK).
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