Sentence examples for each module was calculated from inspiring English sources
Median log2 fold change of hub genes of each module was calculated for each species.
The statistical significance of each module was calculated by comparing to random assignment.
The significance of each module was calculated using the WGCNA package based on gene significance (GS) and module membership (MM).
To compute the significant of finding specific COGs modules, a p-value for each module was calculated based on the distribution of 10,000 random module sets of the same size (assuming a normal distribution) and our module predictions, therefore, representing the probability of seeing such modules at chance.
After all the intermediate gradients have been obtained, the gradient of the loss function relative to the internal weight of each module is calculated.
To visualize the tissue specificity of the expression modules, the activity profile of each expression module was calculated by taking a mean of the expression profiles of the module genes, and presented as a heat map (Figure 8).
The etiologic fraction in the population (EFp) for the exposures that remained in the module was calculated using OPENEPI calculator software [ 14].
The overall thermal resistance of a simple simulation module was calculated by the 3-dimensional finite element method to study the correlation between the thermal conductivity of the joint layer and the thermal properties.
The combined TDT p-value for that module was then compared to a distribution of TDT p-values generated from 10,000 randomly sampled modules of the same size, i.e. the final p-value of a module was calculated as by dividing the number of random modules with a better combined p-value with 10,000.
